Issues with running Gneiss, loading regression summary, and Firefox - view.qiime2.org compatibility

[Alex_14262 (Alexandru Mandrut)]

Hi,

Thanks for that! So I guess it would be sensible to filter the data following these three steps as mentioned here? I can't tell if it would be redundant running all three.

@mortonjt

There isn’t a standard protocol for filtering features, but we recommend filtering out features that don’t contain much information.

By that I mean

Features that have few reads (i.e. less than 10 reads across all samples).
Features that are rarely observed (i.e. present in less than 5 samples in a study).
Features that have very low variance (i.e. less than 10e-4)

So far I have never been able to run qiime view outside virtual box as I get this message:

However, I tried using Google Chrome instead of Firefox and it seems to be working. For all this time I thought it wasn't working on my laptop because I am not running Linux . I think the issue with loading was because of the memory constrain (I have the latest version on both VB and my laptop).

Thanks