Hello,
I'm new to qiime2 and facing a problem importing the taxonomy tsv file from BOLD database. I'm using qiime2 2024.5 (amplicon distribution). I downloaded BOLD_Public.25-Oct-2024.tsv from Bold Systems v4
I used the command:
qiime tools import
--type 'FeatureData[Taxonomy]'
--input-format HeaderlessTSVTaxonomyFormat
--input-path BOLD_Public.25-Oct-2024.tsv
--output-path BOLD_Public.25-Oct-2024.tsv.qza
And I received following error:
Traceback (most recent call last):
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/q2cli/builtin/tools.py", line 852, in _import
artifact = qiime2.sdk.Artifact.import_data(
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/qiime2/sdk/result.py", line 332, in import_data
return cls.from_view(type, view, view_type, provenance_capture,
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/qiime2/sdk/result.py", line 360, in _from_view
result = transformation(view, validate_level)
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/qiime2/core/transform.py", line 70, in transformation
new_view = transformer(view)
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/qiime2/core/transform.py", line 221, in wrapped
file_view = transformer(view)
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/q2_types/feature_data/_transformer.py", line 224, in _20
_taxonomy_formats_to_dataframe(str(ff), has_header=False))
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/q2_types/feature_data/_transformer.py", line 62, in _taxonomy_formats_to_dataframe
df = pd.read_csv(filepath, sep='\t', skip_blank_lines=True,
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 1026, in read_csv
return _read(filepath_or_buffer, kwds)
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 626, in _read
return parser.read(nrows)
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 1923, in read
) = self._engine.read( # type: ignore[attr-defined]
File "/dss/work/fitu9124/qiime2/miniconda3/envs/qiime2-amplicon-2024.5/lib/python3.9/site-packages/pandas/io/parsers/c_parser_wrapper.py", line 234, in read
chunks = self._reader.read_low_memory(nrows)
File "parsers.pyx", line 838, in pandas._libs.parsers.TextReader.read_low_memory
File "parsers.pyx", line 905, in pandas._libs.parsers.TextReader._read_rows
File "parsers.pyx", line 874, in pandas._libs.parsers.TextReader._tokenize_rows
File "parsers.pyx", line 891, in pandas._libs.parsers.TextReader._check_tokenize_status
File "parsers.pyx", line 2061, in pandas._libs.parsers.raise_parser_error
pandas.errors.ParserError: Error tokenizing data. C error: Expected 76 fields in line 1334102, saw 77
An unexpected error has occurred:
Error tokenizing data. C error: Expected 76 fields in line 1334102, saw 77
See above for debug info.
I really don't understand what the problem is. I even tried to cut off column 77 from the file, still same error.
Any help would be greatly appreciated 
Thanks in advance