Issue Using Qiime2R to Create Phyloseq Objects

[Nicholas_Bokulich]

Hi @Ellenphant,
See this current topic for troubleshooting this error:

qiime2R visualization error message

Hi all, I am using qiime2R to make some plots for my 16s data in R, and I am following the tutorial found in this forum: https://forum.qiime2.org/t/tutorial-integrating-qiime2-and-r-for-data-visualization-and-analysis-using-qiime2r/4121 But when I am creating phyloseq object from QIIME2 artifacts, an error came up: Error in file(con, "r") : cannot open the connection All these artifacts were imported into R successfully (in my opinon). Here is the commands I used to create the phyloseq: pi…

Good luck!