I have been trying to use the qiime2R package and just can’t get it to work.
I have set my working directory correctly and am able to import my qza files into the workspace for R studio. However, when trying to use the qza_to_phyloseq command (after setting the tmp to an empty folder) I keep getting the following error:
Error in file(con, “r”) : cannot open the connection
I can’t figure out what I am doing wrong and this is so frustrating! Has anyone else had this issue?