Installing qiime2 on own Galaxy instance

[hrzolix]

Hello everyone

I was wondering if you can help me with installing qiime2 on Galaxy.
We have our own servers on which Galaxy is installed and some of our users asked for qiime2.
I have noticed in the toolshed repo that only wrappers are available to install. How do you install qiime2? Conda, apptainer? And if so where should it be installed?

Thank you

[jphagen (Johannah Hagen)]

Hi @hrzolix,

Welcome to the forum!
I think this post on qiime2 for Galaxy should be helpful for getting you and your users started! Let me know if you have any questions after checking that out.

-Hannah

[hrzolix]

Hi @jphagen

Thanks for the reply. I'm looking to install qiime2 on our own Galaxy instance, not using it, thats for the users. As I saw, qiime2 is only available through singularity not conda. Si I have some trouble installing it because our resolver is conda atm, but I've contacted the Galaxy team and hoping to resolve it shortly.

[jphagen (Johannah Hagen)]

@hrzolix,
Ah I see! I misunderstood. Hopefully the Galaxy team can get you set up with qiime2 today. Please reach out if you need any other qiime2 help!
--Hannah