Hi!
I want to import RDP database to a .qza file in order to use it with feature-classifier classify-sklearn. When you download Greengenes or Silva database you get 2 different files: sequences and taxonomy and you can import them to .qza files and obtain the classifier with fit-classifier-naive-bayes. I would like to do the same for this database.
I’ve downloaded the RDP database from here, specifically Bacteria16S fasta unaligned. There is a unique .txt file with the sequences and the taxonomic assignment. I've attached an extract from this file.
exampleRDPdatabase.txt (2.3 KB)
How can I get the classifier.qza based on this database?
Finally, I have another question: are there big differences between RDP database and Greengenes?
Thanks in advance,
SLa