Can you please post your full command and error message? Im guessing you’re either having a command line wrapping issue (wrong \,) or too many or too many spaces.
I’ll just mention that I’m a huge fan of jupyter notebooks for problems like these, because they let you type out and see the whole command at the same time, and you have a record of exactly what you did.
It looks like you’re missing the qiime tools portion of the command. All your qiime commands start with qiime and then have a plug-in name.
If you’re not sure about the command or plugin, you can always do something like
which will list all the plug ins. You can also use the tutorials to check what the commands are. I also think you and Ben or Colin worked through how you would load data from a manifest several weeks ago, so double checking that is also an option.
I think you’re trying to mix two different types of import methods - could you describe to us what you’re trying to do? We can try to work through it? Also, if you take a look @ the specific parts of the tutorial which are relevant, you will find this code:
Also, I am going to lock this topic down, everything in this thread is a variation of questions asked by @HebaHussein-1981 in previous topics. If there are further issues please review prior posts, and then open a new topic. Thanks!