Hello.
I followed these commands to merge taxonomy assignments with my OTU table.
However, when I am converting it to .txt file using the following command-
biom convert -i table.biom -o table.from_biom_w_taxonomy.txt --to-tsv --header-key taxonomy
I am not getting the taxonomy annotations in the place of OTU IDs.
Kindly guide.
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Hi,
Could you able to fix this problem? I have the same issue, tried many ways, but no fix.
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