How to convert Newick (.tree) format to CSV?

(Amr Elkholy) #1

I just want the command to convert my phylogenetic tree file from Newick tree format to csv.

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(Mehrbod Estaki) #2

Hi @Amr_Elkholy,
The tree files are typically just a regular text file, have you tried just opening them in your preferred program like excel? You just might have to play with the formatting to get it the way you need it. For example, I just imported the rooted tree file from the Moving Pictures tutorial in a comma-delimited format and I can see all the info just fine. There isn’t a (need for) qiime2 command to do this conversion if that’s what you are looking for.

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(system) closed #3

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