Hi, I am particularly interested in several ASVs and I have the name lists of name of the ASVs such as "9c737091c937f26a4c156b5def3291dd".
I am wondering how can I do these things, if possible can you list the name of the QIIME scripts.
I have a ASVs table of 50 samples (these samples are grouped into 5 categories)
1> How can I extract the samples with my interested list of ASVs, I would like to see the counts of each ASV in each sample.
2>How can I extract the group/category with interested list of ASVs, I would like to see the counts of each ASV in each sample.
3>How can I extract the ASVs related sequences -- I don't need the exact reads file, but I would like to know how many reads assigned to a specific ASV.
4>How can I extract the ASVs related taxonomy information. I did this in Qiime 1 where the OTU table can include the taxonomic information. If you convert the biom to excel table, the last row of this table has the taxa information. However, Qiime has an ASV table qza and taxonomy qza, when I convert the ASV to excel table, I can't find taxa information.