Hi! In "Moving pictures" tutorial, I would like to create the taxonomy table with frequency where I can see the frequency of each taxonomy (not as feature ID) for each sample in order to use that table (as biom or csv file) for further statistical analysis with R. I thought I could get that data …

Hi @scho73 ! You can use qiime taxa collapse to create a feature table of frequencies at a particular taxonomic level (this is similar to QIIME 1's summarize_taxa.py script). Once you have the collapsed feature table artifact, you can export a .biom file using qiime tools export.

Hi Jai, It is working! Thank you so much for your kind and quick response.

QIIME 2 Forum

How can I create taxonomy table with frequency?

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collapse, export, taxonomy

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