help with conflicting external packages

Other Bioinformatics Tools
23

Hi @5cr34m
Thank you so much for all the help and support through out.
Finally I successfully installed biobakery_workflow_ database.
And ran the demo samples as well.
Now I have few different queries:

  1. While the databases used in biobakery_ workflows are Chocophlan.
    Is this database feasible for soil and water metagenome analysis.
    Thanks and Regards
24

Hi.
I don't know any problems with Chocophlan using for soil and water.
But i have no experience.
See The ChocoPhlAn 3 pipeline and https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000949?crawler=true
Regards, sn