Similar to the problems above, I am also having issues importing ion torrent fastq files. Again I have one fastq file per sample which has been demultiplexed.
I have created the se-33-manifest.csv file and have modified in many different ways with no success…
The error keep getting is:
‘se-33-manifest.csv is not a(n) SingleEndFastqManifestPhred33 file’
Any help/advice would be much appreciated??
It sounds like you are running into the same issues as this thread. Please read through that thread to see if a solution already exists. Do you have a header line in your manifest file?
If all else fails, please share:
- your manifest file
- a list of the files that you are attempting to import.
- the first few lines of one of your fastqs, so we can make sure this is not a formatting issue.
Thanks for the help, I found a way to make it work. Seems the excel sheet was adding something else to the document.
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