Greengenes2 intallation

Hello, I am facing issue while dowmloading the geengenes2 database. kindly help.

(base) temp@temp-B365M-DS3H:~$ pip install q2-greengenes2
Collecting q2-greengenes2
Downloading q2-greengenes2-2023.3.tar.gz (38 kB)
Preparing metadata ( ... done
Requirement already satisfied: biom-format in ./miniconda3/lib/python3.11/site-packages (from q2-greengenes2) (2.1.15)
Collecting iow (from q2-greengenes2)
Downloading iow-1.0.6.tar.gz (941 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 941.6/941.6 kB 9.9 MB/s eta 0:00:00
Preparing metadata ( ... error
error: subprocess-exited-with-error

× python egg_info did not run successfully.
│ exit code: 1
╰─> [6 lines of output]
Traceback (most recent call last):
File "", line 2, in
File "", line 34, in
File "/tmp/pip-install-pnuep7n2/iow_9abd51eb6e294df381eb75dd1b0ca16d/", line 103, in
from Cython.Build import cythonize
ModuleNotFoundError: No module named 'Cython'
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

Hi @komal,

It looks like this was attempted in the base conda environment. Could it be attempted within a QIIME 2 environment?



Thank you for your time and solutrion, it worked.

1 Like

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.