glm on Aldex2 - formula vs metadata columns

Hi @dgiguer and all,

Thanks for making these tools available to this community!

I am trying to use the -p-test ‘glm’ option on q2-aldex2 but I noticed there’s no option to pass a formula, rather than a single metadata column. I did notice this discussion on here, so I’m generally wondering if there’s a new version coming up, or, alternatively, an available workaround. I suppose running it through R would be one…

Thanks,
Gil

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Hi @Gil_Sharon

We are still working on implementing the glm feature into the qiime package. Currently the work around is to pass it through the R package. Thanks!!

Cheers!

Dan

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