Hi, I am trying to use a ghost tree for fungal ITS sequences and I’ve been following the tutorial but I am having trouble using the pre-made ghost trees and filtering the table to match the feature_ids. I thought there might be some file that just lists all the ghost tree IDs somewhere and you filter using that somehow, but I couldn’t find one.
feature_ids must be present as tip names in
feature_ids not corresponding to tip names (n=3430): "
Can someone explain how exactly you filter your table so that it gets rid of anything not in the ghost tree?
I used a 2/2/2019 UNITE version to do the vclust (I am also confused as to why you cannot use the output from the taxonomy classifier). I could only find 2017 ghost trees so I originally picked the one for the classifier I was using (unite-ver7-dynamic-classifier-01.12.2017.qza), so do those versions have to be identical?
Any help would be very appreciated!