When running a PERMANOVA test, other programs will also give you an r^2 value (such as Primer). It would be nice if Qiime2 would give you an r^2 value (for example) when calculating the p-values for beta group significance.
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thanks @Stephanieorch! I have raised an issue to add this feature. We will post here whenever there are updates.
It still looks like PERMANOVA does not report an R2. It’s now Aug, 2020
Correct - this has not been implemented yet. I'll remind you that QIIME 2 is community developed, which includes folks like you! If this is a feature that is important to you, we would love to see you contribute - feel free to ping us with questions about development etc.
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