Is this pattern stronger based on unweighted UniFrac or Bray-Curtis distance? Based on how you know about these metrics, what does this suggest to you about what is changing in the microbiome with fecal microbiota transplant?
I found a stronger pattern for the Bray-Curtis distance compared to unweighted UniFrac. Unlike unweighted UniFrac, I am aware that Bray-Curtis does not take phylogeny into account. But I am struggling to understand what this suggests about the change in microbiome with the FMT treatment. Any help please? Thank you!