I am trying to use OTUs ID to filter out OTUs from the feature-table. I’ve checked and followed this post [Filter OTUs from features table using OTU IDs?], but only some OTUs were removed from the list.
I am using QIIME2.2019.1
Here is what I ran:
qiime feature-table filter-samples
–o-filtered-table Filtered-feature-table.qza \
My OTUs_ID file is like
I have around 267 OTUs to remove, and output only removed 85 OTUs. Is the OTUs read number matter? There are some OTUs have high read number. If the read number doesn’t matter, is there a way to troubleshoot this? Or any other suggestion?