I have run this line successfully on a different dataset in qiime2-2020.2. This time however, it keeps running indefinitely and never outputs a .qzv file. Moreover, the command does not print any stacktrace/logs, even with the --verbose option, making it difficult for me to diagnose what is going on. I am processing 309 samples.
I have had a look in the forum (e.g. here) and elsewhere online but haven't found a solution.
Any help would be much appreciated. Thanks in advance!
I'm not sure what was the cause of that - I just reviewed the code for that visualization and there were no changes to it between 2021.2 and 2021.4. I know this is a silly question, but I've done this before: did you forget to hit "Enter" after writing the command?
Have you tried again in 2021.4? Are you still seeing this?
I left it to run overnight, approximately 9 hours. When I woke up and saw it was still running I killed it. Then i tried again and left it for a few hours each time, then killed it.
Wow, that is crazy - you're more patient than me. I'll put this on the TODO list to take a closer look at the more recent changes to that viz to see if there are any obvious issues there. Thanks for the info and the bug report!