I have a feature table I recived from collaborator, using Qiime1 to process the sequences.
It looks like feature tables usually look, with first coulmn containing feature information and each coulmn is a sample with counts:
taxatable = pd.read_table("/table.tsv", index_col = 0)
gives me a dataframe of all features as indexes and coulmns for samples.
Than, if I try to import it as a QIIME2 feature table:
taxatable_feature_table = q2.Artifact.import_data(type="FeatureTable[Frequency]", view=taxatable)
and summarize the results, I get a table of my features as samples, and samples as features. obviously calling
on the taxatable solves it, but from what I know my origial table looks like feature tables should be organised for QIIME2..