Hi all,
I'm struggling to run the following command:
qiime feature-table summarize --i-table table.qza --o-visualization table.qzv --m-sample-metadata-file Sample_metadataQIIME2_sheep_project_2017_2018.txt
Because I get the following error message:
Plugin error from feature-table:
The following IDs are not present in the metadata: 'G1-8667-TP89', 'G1-8673-TP0', 'G1-8673-TP75', 'G1-8674-TP0', 'G1-8674-TP42', 'G1-8674-TP61', 'G1-8674-TP75', 'G1-8674-TP99', 'G1-8686-TP42', 'G1-8686-TP99', 'G2-9110-TP42', 'G3-8743-TP42', 'G4-8744-TP42', 'G4-8744-TP61', 'G4-8744-TP75', 'G4-8744-TP89', 'G4-8744-TP99', 'G4-9111-TP0', 'G4-9111-TP75', 'G4-9111-TP89', 'G4-9185-TP42', 'G4-9185-TP89', 'G4-9208-TP0', 'G4-9208-TP61', 'G4-9208-TP75', 'G4-9208-TP99', 'G5-8670-TP75', 'G5-8670-TP99', 'G5-9102-TP61', 'G6-8704-TP99', 'G6-8749-TP0', 'G6-8749-TP99', 'G7-8731-TP75', 'G7-8758-TP75', 'G7-8762-TP61', 'G7-8762-TP75', 'G7-8762-TP89'
Debug info has been saved to /tmp/qiime2-q2cli-err-5xlg9iwf.log
Apparently, there are some missing samples.
I checked the metadata file. The spelling seems to be ok.
I have ran feature-table without the --m-sample-metadata-file, and then I visualized the table.qzv, those samples are in the list.
Here attached the table.qzv and the metadata filetable.qzv (5.6 MB) Sample_metadataQIIME2_sheep_project_2017_2018.txt (54.6 KB)
Any idea, suggestions?
Thanks in advance