Hi,
I'm trying to use FAPROTAX ( Louca lab, UO )
However I can't figure out how to obtain an OTU table as the one reported in the tutorial from qiime2, as from qiime tools export I obtain this kind of table:
and not the one required:
how can i manage to export this type of table from qiime2?
Thank you!
Hi @Andrea_Colautti,
I haven't personally used FAPROTAX, but from what you posted it looks as though you just need to tag taxonomy to your biom table, which is not the default behavior in QIIME 2.
In another mini-tutorial I've made here I had to do the same thing so following the relevant steps there should help, let me know if you run into any issues.
Hello
I am trying to use FAPROTAX. I already instal phyton 3.7 and also numpy, but I don´t know how to input my otu table and use the script collapse_table.py.
This is the table that I have and I want to do functional annotation
Taxa.otu_table.biom (133.7 KB)
