Hi all!
I am trying to import fastq.gz paired end files without manifest file in qiime 2. I am using the following code:
qiime tools import --type 'SampleData[PairedEndSequencesWithQuality]' --input-path /home/manuel_os/bird2 --input-format CasavaOneEightSingleLanePerSampleDirFmt --output-path demux-paired-end.qza
But the following error appears:
There was a problem importing /home/manuel_os/bird:
/home/manuel_os/penguin is not a(n) CasavaOneEightSingleLanePerSampleDirFmt:
Duplicate samples in forward reads: {'S_mage_back', 'S_mage_plum', 'A_pata_back', 'S_mage_foot', 'S_mage_nest', 'A_pata_plum', 'A_pata_foot'}
Here is an example of the name of my files:
A_pata_back_1_L001_R1_001.fastq.gz
A_pata_back_1_L001_R2_001.fastq.gz
Thanks in advance!
Best regards