Thanks for the response.
QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Traceback (most recent call last):
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/init.py", line 26, in
from pandas._libs import (hashtable as _hashtable,
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/_libs/init.py", line 4, in
from .tslib import iNaT, NaT, Timestamp, Timedelta, OutOfBoundsDatetime
ImportError: No module named 'pandas._libs.tslib'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ql770/.conda/envs/qiime2-2017.12/bin/qiime", line 11, in
sys.exit(qiime())
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 722, in call
return self.main(*args, **kwargs)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 1061, in invoke
cmd_name, cmd, args = self.resolve_command(ctx, args)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 1100, in resolve_command
cmd = self.get_command(ctx, cmd_name)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 77, in get_command
plugin = self._plugin_lookup[name]
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 53, in _plugin_lookup
import q2cli.cache
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 302, in
CACHE = DeploymentCache()
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 61, in init
self._state = self._get_cached_state(refresh=refresh)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 107, in _get_cached_state
self._cache_current_state(current_requirements)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 200, in _cache_current_state
state = self._get_current_state()
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 232, in _get_current_state
import qiime2.sdk
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/init.py", line 10, in
from qiime2.metadata import Metadata, MetadataCategory
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/metadata.py", line 15, in
import pandas as pd
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/init.py", line 35, in
"the C extensions first.".format(module))
ImportError: C extension: No module named 'pandas._libs.tslib' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.
QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Traceback (most recent call last):
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/init.py", line 26, in
from pandas._libs import (hashtable as _hashtable,
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/_libs/init.py", line 4, in
from .tslib import iNaT, NaT, Timestamp, Timedelta, OutOfBoundsDatetime
ImportError: No module named 'pandas._libs.tslib'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ql770/.conda/envs/qiime2-2017.12/bin/qiime", line 11, in
sys.exit(qiime())
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 722, in call
return self.main(*args, **kwargs)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 1061, in invoke
cmd_name, cmd, args = self.resolve_command(ctx, args)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 1100, in resolve_command
cmd = self.get_command(ctx, cmd_name)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 77, in get_command
plugin = self._plugin_lookup[name]
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 53, in _plugin_lookup
import q2cli.cache
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 302, in
CACHE = DeploymentCache()
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 61, in init
self._state = self._get_cached_state(refresh=refresh)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 107, in _get_cached_state
self._cache_current_state(current_requirements)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 200, in _cache_current_state
state = self._get_current_state()
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 232, in _get_current_state
import qiime2.sdk
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/init.py", line 10, in
from qiime2.metadata import Metadata, MetadataCategory
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/metadata.py", line 15, in
import pandas as pd
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/init.py", line 35, in
"the C extensions first.".format(module))
ImportError: C extension: No module named 'pandas._libs.tslib' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.
QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Traceback (most recent call last):
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/init.py", line 26, in
from pandas._libs import (hashtable as _hashtable,
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/_libs/init.py", line 4, in
from .tslib import iNaT, NaT, Timestamp, Timedelta, OutOfBoundsDatetime
ImportError: No module named 'pandas._libs.tslib'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ql770/.conda/envs/qiime2-2017.12/bin/qiime", line 11, in
sys.exit(qiime())
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 722, in call
return self.main(*args, **kwargs)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 1061, in invoke
cmd_name, cmd, args = self.resolve_command(ctx, args)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 1100, in resolve_command
cmd = self.get_command(ctx, cmd_name)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 77, in get_command
plugin = self._plugin_lookup[name]
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 53, in _plugin_lookup
import q2cli.cache
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 302, in
CACHE = DeploymentCache()
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 61, in init
self._state = self._get_cached_state(refresh=refresh)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 107, in _get_cached_state
self._cache_current_state(current_requirements)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 200, in _cache_current_state
state = self._get_current_state()
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 232, in _get_current_state
import qiime2.sdk
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/init.py", line 10, in
from qiime2.metadata import Metadata, MetadataCategory
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/metadata.py", line 15, in
import pandas as pd
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/init.py", line 35, in
"the C extensions first.".format(module))
ImportError: C extension: No module named 'pandas._libs.tslib' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.
QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Traceback (most recent call last):
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/init.py", line 26, in
from pandas._libs import (hashtable as _hashtable,
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/_libs/init.py", line 4, in
from .tslib import iNaT, NaT, Timestamp, Timedelta, OutOfBoundsDatetime
ImportError: No module named 'pandas._libs.tslib'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ql770/.conda/envs/qiime2-2017.12/bin/qiime", line 11, in
sys.exit(qiime())
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 722, in call
return self.main(*args, **kwargs)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 1061, in invoke
cmd_name, cmd, args = self.resolve_command(ctx, args)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/click/core.py", line 1100, in resolve_command
cmd = self.get_command(ctx, cmd_name)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 77, in get_command
plugin = self._plugin_lookup[name]
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/commands.py", line 53, in _plugin_lookup
import q2cli.cache
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 302, in
CACHE = DeploymentCache()
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 61, in init
self._state = self._get_cached_state(refresh=refresh)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 107, in _get_cached_state
self._cache_current_state(current_requirements)
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 200, in _cache_current_state
state = self._get_current_state()
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/cache.py", line 232, in _get_current_state
import qiime2.sdk
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/init.py", line 10, in
from qiime2.metadata import Metadata, MetadataCategory
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/metadata.py", line 15, in
import pandas as pd
File "/home/ql770/.conda/envs/qiime2-2017.12/lib/python3.5/site-packages/pandas/init.py", line 35, in
"the C extensions first.".format(module))
ImportError: C extension: No module named 'pandas._libs.tslib' not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --inplace --force' to build the C extensions first.
I ran this on a Linux cluster (CentOS 7.3). And here is the list of packages: