Error to install qiime2-2022.2 with conda

[yjk555 (Jiangkun Yu)]

Hi,
I am going to install the qiime2-2022.2 with conda on my mac, however, the same error happened for many times and can't be solved. Could you please do me a favor?
I succeeded in the installation of the miniconda and made some settings before install qiime2
(wget https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O ~/miniconda.sh; bash ~/miniconda.sh -b -p $HOME/miniconda; source ~/miniconda/bin/activate;
conda init zsh; conda update conda), these codes are working well.
And then I installed the qimme2-2022.2 using the codes "wget https://data.qiime2.org/distro/core/qiime2-2022.2-py38-osx-conda.yml
conda env create -n qiime2-2022.2 --file qiime2-2022.2-py38-osx-conda.yml", and get the error "ERROR conda.core.link:_execute(730): An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.7-r41hdfd78af_1'. Rolling back transaction: done
class: LinkError
message:
post-link script failed for package bioconda::bioconductor-genomeinfodbdata-1.2.7-r41hdfd78af_1
location of failed script: /Users/jiangkun/miniconda/envs/qiime2-2022.2/bin/.bioconductor-genomeinfodbdata-post-link.sh ..........(many lines)"
I realized the installation fail was caused by package 'bioconda::bioconductor-genomeinfodbdata-1.2.7-r41hdfd78af_1', so I download this package and installed locally (conda install ~/Downloads/bioconductor-genomeinfodbdata-1.2.7-r41hdfd78af_1.tar.bz2), however, I got the error same with above. Any answer or suggestions will be appreciated.
Kind regards,
Jiangkun

[lizgehret]

Hi @yjk555,

Welcome to the :qiime2: forum!

From the error message you provided, it seems like there might be an issue with your conda environment(s) - can you run the following command for me and copy/paste the output in your response:

conda env list

Thanks!

[yjk555 (Jiangkun Yu)]

The output of "conda env list" are as follow:

conda env list

conda environments:

base * /Users/jiangkun/miniconda
qiime2-2022.2 /Users/jiangkun/miniconda/envs/qiime2-2022.2

Looking forward to your reply!
Jiangkun Yu

[lizgehret]

Hi @yjk555,

Thanks for sharing that! If you are working with a new mac that uses an M1 arm chip (thus requiring osx-arm64 builds), this forum post may provide a suitable workaround for you. Let us know if this doesn't resolve the issue!