Hi, I have a problem with taxonomy generation.
The command lines I used is:
time qiime feature-classifier classify-sklearn
And the error message is: There was a problem with the command:
(1/1) Invalid value for '--i-classifier': Expected an artifact of at least type TaxonomicClassifier. An artifact of type FeatureData[Sequence] was provided.
Thanks in advance.
Welcome to the forums!
As it mentions in the error, this command needs a
TaxonomicClassifier instead of sequences.
Are you trying to use a custom 12S database to classify your reads? If so, you might want to check out the RESCRIPt plugin or this post about building a 12S database with RESCRIPt.
Let us know if you have any other questions!
I am a little late to the party but just an FYI:
In our RESCRIPt paper, we have a supplementary example of making a 12S rRNA db:
Additional details are here.
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