Good morning to all!
I have a doubt about longitudinal analyses performed on my samples. I will explain:
I have 120 fecal samples (collected from 60 animal divided in three groups of 20) fed with different diet and collected in two different time T0 and T1.
The taxonomy suggest me (and this data is consistent) that between two paired samples there is a difference in the microbiota composition, but when I performed the longitudinal analyses the result showed me not significant difference. I want to know if the diet impact on the microbiota.
The script is the follow:
qiime longitudinal pairwise-distances
Someone can help me to understand if it is correct the script?
thanks in advances