Hi,
I'm having issues with getting the latest version of QIIME to run through conda.
Set up the environment with the .yml file (qiime2-2022.11-py38-linux-conda.yml) and mamba:
$ mamba --version
mamba 1.3.0
conda 22.11.1
$ uname -a
Linux micro-109 4.4.0-148-generic #174~14.04.1-Ubuntu SMP Thu May 9 08:17:37 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Upon activation, I get the following errors:
QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Traceback (most recent call last):
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/util.py", line 266, in get_plugin_manager
return qiime2.sdk.PluginManager.reuse_existing()
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/qiime2/sdk/plugin_manager.py", line 58, in reuse_existing
raise UninitializedPluginManagerError
qiime2.sdk.plugin_manager.UninitializedPluginManagerError
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/leon/miniconda3/envs/qiime2-2022.11/bin/qiime", line 11, in <module>
sys.exit(qiime())
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 1130, in __call__
return self.main(*args, **kwargs)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 1054, in main
with self.make_context(prog_name, args, **extra) as ctx:
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 920, in make_context
self.parse_args(ctx, args)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/click/command.py", line 43, in parse_args
return super().parse_args(ctx, args)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 1613, in parse_args
rest = super().parse_args(ctx, args)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 1378, in parse_args
value, args = param.handle_parse_result(ctx, opts, args)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 2360, in handle_parse_result
value = self.process_value(ctx, value)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 2322, in process_value
value = self.callback(ctx, self, value)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 1273, in show_help
echo(ctx.get_help(), color=ctx.color)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 699, in get_help
return self.command.get_help(self)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 1298, in get_help
self.format_help(ctx, formatter)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/click/core.py", line 1331, in format_help
self.format_options(ctx, formatter)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/click/command.py", line 157, in format_options
for subcommand in self.list_commands(ctx):
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/commands.py", line 92, in list_commands
plugins = sorted(self._plugin_lookup)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/commands.py", line 76, in _plugin_lookup
import q2cli.core.cache
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/core/cache.py", line 285, in <module>
CACHE = DeploymentCache()
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/core/cache.py", line 61, in __init__
self._state = self._get_cached_state(refresh=refresh)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/core/cache.py", line 107, in _get_cached_state
self._cache_current_state(current_requirements)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/core/cache.py", line 205, in _cache_current_state
state = self._get_current_state()
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/core/cache.py", line 253, in _get_current_state
plugin_manager = q2cli.util.get_plugin_manager()
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2cli/util.py", line 278, in get_plugin_manager
return qiime2.sdk.PluginManager()
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/qiime2/sdk/plugin_manager.py", line 67, in __new__
self._init(add_plugins=add_plugins)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/qiime2/sdk/plugin_manager.py", line 105, in _init
plugin = entry_point.load()
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2471, in load
return self.resolve()
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2477, in resolve
module = __import__(self.module_name, fromlist=['__name__'], level=0)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_composition/__init__.py", line 14, in <module>
from ._type import DifferentialAbundance
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_composition/_type.py", line 10, in <module>
from q2_types.feature_data import FeatureData
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_types/__init__.py", line 18, in <module>
importlib.import_module('q2_types.multiplexed_sequences')
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_types/multiplexed_sequences/__init__.py", line 11, in <module>
from ._format import (MultiplexedSingleEndBarcodeInSequenceDirFmt,
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_types/multiplexed_sequences/_format.py", line 11, in <module>
from ..per_sample_sequences import FastqGzFormat
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_types/per_sample_sequences/__init__.py", line 11, in <module>
from ._format import (CasavaOneEightSingleLanePerSampleDirFmt,
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_types/per_sample_sequences/_format.py", line 16, in <module>
import skbio
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/skbio/__init__.py", line 19, in <module>
import skbio.diversity # noqa
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/skbio/diversity/__init__.py", line 402, in <module>
from ._driver import (alpha_diversity, beta_diversity, partial_beta_diversity,
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/skbio/diversity/_driver.py", line 13, in <module>
import sklearn.metrics
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/sklearn/__init__.py", line 83, in <module>
from .utils._show_versions import show_versions
File "/home/leon/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/sklearn/utils/_show_versions.py", line 12, in <module>
from ._openmp_helpers import _openmp_parallelism_enabled
ImportError: dlopen: cannot load any more object with static TLS
I've seen the line "ImportError: dlopen: cannot load any more object with static TLS" relating to another thread in the forum: dlopen cannot load any more object with static TLS
and one of the solutions for this was to update glibc, but I don't see that solving my issue as well:
$ ldd --version
ldd (Ubuntu EGLIBC 2.19-0ubuntu6.15) 2.19
Copyright (C) 2014 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Written by Roland McGrath and Ulrich Drepper.
$ apt-cache policy libc6
libc6:
Installed: 2.19-0ubuntu6.15
Candidate: 2.19-0ubuntu6.15
Version table:
*** 2.19-0ubuntu6.15 0
500 http://de.archive.ubuntu.com/ubuntu/ trusty-updates/main amd64 Packages
500 http://security.ubuntu.com/ubuntu/ trusty-security/main amd64 Packages
100 /var/lib/dpkg/status
2.19-0ubuntu6 0
500 http://de.archive.ubuntu.com/ubuntu/ trusty/main amd64 Packages
Here the installed package versions as well:
$ conda list
# packages in environment at /home/leon/miniconda3/envs/qiime2-2022.11:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
alsa-lib 1.2.8 h166bdaf_0 conda-forge
anyio 3.6.2 pyhd8ed1ab_0 conda-forge
argcomplete 2.0.0 pyhd8ed1ab_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py38h0a891b7_3 conda-forge
astor 0.8.1 pyh9f0ad1d_0 conda-forge
asttokens 2.2.1 pyhd8ed1ab_0 conda-forge
atpublic 3.0.1 pyhd8ed1ab_0 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
attrs 22.2.0 pyh71513ae_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.11.1 pyha770c72_0 conda-forge
bibtexparser 1.4.0 pyhd8ed1ab_0 conda-forge
binutils_impl_linux-64 2.39 he00db2b_1 conda-forge
bioconductor-ancombc 2.0.1 r42hdfd78af_0 bioconda
bioconductor-beachmat 2.14.0 r42hc247a5b_0 bioconda
bioconductor-biobase 2.58.0 r42hc0cfd56_0 bioconda
bioconductor-biocbaseutils 1.0.0 r42hdfd78af_0 bioconda
bioconductor-biocgenerics 0.44.0 r42hdfd78af_0 bioconda
bioconductor-biocneighbors 1.16.0 r42hc247a5b_0 bioconda
bioconductor-biocparallel 1.32.5 r42hc247a5b_0 bioconda
bioconductor-biocsingular 1.14.0 r42hc247a5b_0 bioconda
bioconductor-biomformat 1.26.0 r42hdfd78af_0 bioconda
bioconductor-biostrings 2.66.0 r42hc0cfd56_0 bioconda
bioconductor-dada2 1.26.0 r42hc247a5b_0 bioconda
bioconductor-data-packages 20221112 hdfd78af_0 bioconda
bioconductor-decipher 2.26.0 r42hc0cfd56_0 bioconda
bioconductor-decontam 1.18.0 r42hdfd78af_0 bioconda
bioconductor-delayedarray 0.24.0 r42hc0cfd56_0 bioconda
bioconductor-delayedmatrixstats 1.20.0 r42hdfd78af_0 bioconda
bioconductor-dirichletmultinomial 1.40.0 r42hda872b5_0 bioconda
bioconductor-genomeinfodb 1.34.1 r42hdfd78af_0 bioconda
bioconductor-genomeinfodbdata 1.2.9 r42hdfd78af_0 bioconda
bioconductor-genomicalignments 1.34.0 r42hc0cfd56_0 bioconda
bioconductor-genomicranges 1.50.0 r42hc0cfd56_0 bioconda
bioconductor-iranges 2.32.0 r42hc0cfd56_0 bioconda
bioconductor-matrixgenerics 1.10.0 r42hdfd78af_0 bioconda
bioconductor-mia 1.6.0 r42hdfd78af_0 bioconda
bioconductor-multiassayexperiment 1.24.0 r42hdfd78af_0 bioconda
bioconductor-multtest 2.54.0 r42hc0cfd56_0 bioconda
bioconductor-phyloseq 1.42.0 r42hdfd78af_0 bioconda
bioconductor-rhdf5 2.42.0 r42hbe1951d_1 bioconda
bioconductor-rhdf5filters 1.10.0 r42hc247a5b_0 bioconda
bioconductor-rhdf5lib 1.20.0 r42hc0cfd56_0 bioconda
bioconductor-rhtslib 2.0.0 r42hc0cfd56_0 bioconda
bioconductor-rsamtools 2.14.0 r42hc247a5b_0 bioconda
bioconductor-s4vectors 0.36.0 r42hc0cfd56_0 bioconda
bioconductor-scaledmatrix 1.6.0 r42hdfd78af_0 bioconda
bioconductor-scater 1.26.0 r42hdfd78af_0 bioconda
bioconductor-scuttle 1.8.0 r42hc247a5b_0 bioconda
bioconductor-shortread 1.56.0 r42hc247a5b_0 bioconda
bioconductor-singlecellexperiment 1.20.0 r42hdfd78af_0 bioconda
bioconductor-sparsematrixstats 1.10.0 r42hc247a5b_0 bioconda
bioconductor-summarizedexperiment 1.28.0 r42hdfd78af_0 bioconda
bioconductor-treeio 1.22.0 r42hdfd78af_0 bioconda
bioconductor-treesummarizedexperiment 2.6.0 r42hdfd78af_0 bioconda
bioconductor-xvector 0.38.0 r42hc0cfd56_0 bioconda
bioconductor-zlibbioc 1.44.0 r42hc0cfd56_0 bioconda
biom-format 2.1.12 py38h26c90d9_2 conda-forge
blast 2.13.0 hf3cf87c_0 bioconda
bleach 5.0.1 pyhd8ed1ab_0 conda-forge
bokeh 3.0.3 pyhd8ed1ab_0 conda-forge
bowtie2 2.5.0 py38h77f66f0_0 bioconda
brotli 1.0.9 h166bdaf_8 conda-forge
brotli-bin 1.0.9 h166bdaf_8 conda-forge
brotlipy 0.7.0 py38h0a891b7_1005 conda-forge
bwidget 1.9.14 ha770c72_1 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2022.12.7 ha878542_0 conda-forge
cachecontrol 0.12.11 pyhd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.16.0 ha61ee94_1014 conda-forge
certifi 2022.12.7 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py38h4a40e3a_3 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.1.2 pyhd8ed1ab_0 conda-forge
contourpy 1.0.6 py38h43d8883_0 conda-forge
cryptography 39.0.0 py38h1724139_0 conda-forge
curl 7.87.0 h6312ad2_0 conda-forge
cutadapt 4.2 py38hbff2b2d_0 bioconda
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cython 0.29.33 py38h8dc9893_0 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
deblur 1.1.1 pyhdfd78af_0 bioconda
debugpy 1.6.5 py38h8dc9893_0 conda-forge
decorator 4.4.2 py_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dendropy 4.5.2 pyh3252c3a_0 bioconda
dill 0.3.6 pyhd8ed1ab_1 conda-forge
dnaio 0.10.0 py38hbff2b2d_0 bioconda
emperor 1.0.3 py38h578d9bd_0 conda-forge
entrez-direct 16.2 he881be0_1 bioconda
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.1.0 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 h27087fc_0 conda-forge
fastcluster 1.2.6 py38h8f669ce_2 conda-forge
fasttree 2.1.11 hec16e2b_1 bioconda
fftw 3.3.10 nompi_hf0379b8_106 conda-forge
flit-core 3.8.0 pyhd8ed1ab_0 conda-forge
flufl.lock 7.1 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.1 hc2a2eb6_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.38.0 py38h0a891b7_1 conda-forge
formulaic 0.5.2 pyhd8ed1ab_0 conda-forge
freetype 2.12.1 hca18f0e_1 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
future 0.18.2 pyhd8ed1ab_6 conda-forge
gcc_impl_linux-64 12.2.0 hcc96c02_19 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
gfortran_impl_linux-64 12.2.0 h55be85b_19 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
glib 2.74.1 h6239696_1 conda-forge
glib-tools 2.74.1 h6239696_1 conda-forge
glpk 5.0 h445213a_0 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
gneiss 0.4.6 py_0 bioconda
graphite2 1.3.13 h58526e2_1001 conda-forge
graphlib-backport 1.0.3 pyhd8ed1ab_0 conda-forge
gsl 2.7 he838d99_0 conda-forge
gst-plugins-base 1.21.3 h4243ec0_1 conda-forge
gstreamer 1.21.3 h25f0c4b_1 conda-forge
gstreamer-orc 0.4.33 h166bdaf_0 conda-forge
gxx_impl_linux-64 12.2.0 hcc96c02_19 conda-forge
h5py 2.10.0 nompi_py38h9915d05_106 conda-forge
harfbuzz 6.0.0 h8e241bc_0 conda-forge
hdf5 1.10.6 nompi_h6a2412b_1114 conda-forge
hdmedians 0.14.2 py38h26c90d9_3 conda-forge
hmmer 3.1b2 3 bioconda
htslib 1.16 h6bc39ce_0 bioconda
icu 70.1 h27087fc_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
ijson 3.2.0.post0 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.8.3 py38h578d9bd_0 conda-forge
importlib_metadata 4.8.3 hd8ed1ab_0 conda-forge
importlib_resources 5.10.2 pyhd8ed1ab_0 conda-forge
iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge
interface_meta 1.3.0 pyhd8ed1ab_0 conda-forge
iow 1.0.5 py38h8ded8fe_1 bioconda
ipykernel 6.20.1 pyh210e3f2_0 conda-forge
ipython 8.8.0 pyh41d4057_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.4 pyhd8ed1ab_0 conda-forge
iqtree 2.2.0.3 hb97b32f_1 bioconda
isa-l 2.30.0 ha770c72_4 conda-forge
jack 1.9.21 h583fa2b_2 conda-forge
jedi 0.18.2 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
joblib 1.2.0 pyhd8ed1ab_0 conda-forge
jpeg 9e h166bdaf_2 conda-forge
jq 1.6 h36c2ea0_1000 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter_client 7.4.8 pyhd8ed1ab_0 conda-forge
jupyter_core 5.1.3 py38h578d9bd_0 conda-forge
jupyter_events 0.6.2 pyhd8ed1ab_0 conda-forge
jupyter_server 2.0.6 pyhd8ed1ab_0 conda-forge
jupyter_server_terminals 0.4.4 pyhd8ed1ab_1 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.5 pyhd8ed1ab_0 conda-forge
kernel-headers_linux-64 2.6.32 he073ed8_15 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.4 py38h43d8883_1 conda-forge
krb5 1.20.1 hf9c8cef_0 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
lcms2 2.14 h6ed2654_0 conda-forge
ld_impl_linux-64 2.39 hcc3a1bd_1 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_8 conda-forge
libbrotlidec 1.0.9 h166bdaf_8 conda-forge
libbrotlienc 1.0.9 h166bdaf_8 conda-forge
libcap 2.66 ha37c62d_0 conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libclang 15.0.6 default_h2e3cab8_0 conda-forge
libclang13 15.0.6 default_h3a83d3e_0 conda-forge
libcups 2.3.3 h36d4200_3 conda-forge
libcurl 7.87.0 h6312ad2_0 conda-forge
libdb 6.2.32 h9c3ff4c_0 conda-forge
libdeflate 1.13 h166bdaf_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.10 h9b69904_4 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.2 h27087fc_0 conda-forge
libgcc-devel_linux-64 12.2.0 h3b97bd3_19 conda-forge
libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgcrypt 1.10.1 h166bdaf_0 conda-forge
libgfortran-ng 12.2.0 h69a702a_19 conda-forge
libgfortran5 12.2.0 h337968e_19 conda-forge
libglib 2.74.1 h606061b_1 conda-forge
libgomp 12.2.0 h65d4601_19 conda-forge
libgpg-error 1.46 h620e276_0 conda-forge
libhwloc 2.8.0 h32351e8_1 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libidn2 2.3.4 h166bdaf_0 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
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libllvm11 11.1.0 he0ac6c6_5 conda-forge
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r-selectr 0.4_2 r42hc72bb7e_2 conda-forge
r-sitmo 2.0.2 r42h7525677_1 conda-forge
r-snow 0.4_4 r42hc72bb7e_1 conda-forge
r-sp 1.5_1 r42h06615bd_0 conda-forge
r-statmod 1.5.0 r42h74f4db8_0 conda-forge
r-stringi 1.7.12 r42h1ae9187_0 conda-forge
r-stringr 1.5.0 r42h785f33e_0 conda-forge
r-survival 3.5_0 r42h133d619_0 conda-forge
r-sys 3.4.1 r42h06615bd_0 conda-forge
r-systemfonts 1.0.4 r42h0ff29ef_1 conda-forge
r-textshaping 0.3.6 r42hbb20487_4 conda-forge
r-tibble 3.1.8 r42h06615bd_1 conda-forge
r-tidyr 1.2.1 r42h7525677_1 conda-forge
r-tidyselect 1.2.0 r42hc72bb7e_0 conda-forge
r-tidytree 0.4.2 r42hc72bb7e_0 conda-forge
r-tidyverse 1.3.2 r42hc72bb7e_1 conda-forge
r-timechange 0.2.0 r42h38f115c_0 conda-forge
r-tinytex 0.43 r42hc72bb7e_0 conda-forge
r-tzdb 0.3.0 r42h7525677_1 conda-forge
r-utf8 1.2.2 r42h06615bd_1 conda-forge
r-uuid 1.1_0 r42h06615bd_1 conda-forge
r-uwot 0.1.14 r42h7525677_1 conda-forge
r-vctrs 0.5.1 r42h7525677_0 conda-forge
r-vegan 2.6_4 r42hb20cf53_0 conda-forge
r-vipor 0.4.5 r42hc72bb7e_1004 conda-forge
r-viridis 0.6.2 r42hc72bb7e_1 conda-forge
r-viridislite 0.4.1 r42hc72bb7e_1 conda-forge
r-vroom 1.6.0 r42h7525677_1 conda-forge
r-withr 2.5.0 r42hc72bb7e_1 conda-forge
r-xfun 0.36 r42h38f115c_0 conda-forge
r-xml2 1.3.3 r42h044e5c7_2 conda-forge
r-xtable 1.8_4 r42hc72bb7e_4 conda-forge
r-yaml 2.3.6 r42h06615bd_0 conda-forge
r-yulab.utils 0.0.6 r42hc72bb7e_0 conda-forge
raxml 8.2.12 hec16e2b_4 bioconda
readline 8.1.2 h0f457ee_0 conda-forge
requests 2.28.1 pyhd8ed1ab_1 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge
rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge
samtools 1.16.1 h6899075_1 bioconda
scikit-bio 0.5.7 py38h6c62de6_0 conda-forge
scikit-learn 0.24.1 py38h658cfdd_0 conda-forge
scipy 1.8.1 py38h8ce737c_3 conda-forge
seaborn 0.12.2 hd8ed1ab_0 conda-forge
seaborn-base 0.12.2 pyhd8ed1ab_0 conda-forge
sed 4.8 he412f7d_0 conda-forge
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
sepp 4.3.10 py38h3252c3a_2 bioconda
setuptools 65.6.3 pyhd8ed1ab_0 conda-forge
sip 6.7.5 py38hfa26641_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
sortmerna 2.0 he860b03_4 bioconda
soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
statsmodels 0.13.5 py38h26c90d9_2 conda-forge
sysroot_linux-64 2.12 he073ed8_15 conda-forge
tbb 2021.7.0 h924138e_1 conda-forge
terminado 0.17.1 pyh41d4057_0 conda-forge
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
tktable 2.10 hb7b940f_3 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.2 py38h0a891b7_1 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.8.1 pyhd8ed1ab_0 conda-forge
typing-extensions 4.4.0 hd8ed1ab_0 conda-forge
typing_extensions 4.4.0 pyha770c72_0 conda-forge
tzlocal 2.1 pyh9f0ad1d_0 conda-forge
umap-learn 0.5.3 py38h578d9bd_0 conda-forge
unicodedata2 15.0.0 py38h0a891b7_0 conda-forge
unifrac 1.1.1 py38h17adfb0_1 bioconda
unifrac-binaries 1.1.1 h15a0faf_4 bioconda
urllib3 1.26.14 pyhd8ed1ab_0 conda-forge
vsearch 2.22.1 hf1761c0_0 bioconda
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
websocket-client 1.4.2 pyhd8ed1ab_0 conda-forge
wget 1.20.3 ha56f1ee_1 conda-forge
wheel 0.38.4 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.5 pyhd8ed1ab_0 conda-forge
wrapt 1.14.1 py38h0a891b7_1 conda-forge
xcb-util 0.4.0 h516909a_0 conda-forge
xcb-util-image 0.4.0 h166bdaf_0 conda-forge
xcb-util-keysyms 0.4.0 h516909a_0 conda-forge
xcb-util-renderutil 0.3.9 h166bdaf_0 conda-forge
xcb-util-wm 0.4.1 h516909a_0 conda-forge
xmltodict 0.13.0 pyhd8ed1ab_0 conda-forge
xopen 1.7.0 py38h578d9bd_0 conda-forge
xorg-fixesproto 5.0 h7f98852_1002 conda-forge
xorg-inputproto 2.3.2 h7f98852_1002 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxfixes 5.0.3 h7f98852_1004 conda-forge
xorg-libxi 1.7.10 h7f98852_0 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-libxt 1.2.1 h7f98852_2 conda-forge
xorg-libxtst 1.2.3 h7f98852_1002 conda-forge
xorg-recordproto 1.14.2 h7f98852_1002 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xyzservices 2022.9.0 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
yq 3.1.0 pyhd8ed1ab_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zipp 3.11.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h166bdaf_4 conda-forge
zstandard 0.19.0 py38h5945529_1 conda-forge
zstd 1.5.2 h3eb15da_6 conda-forge
My last successful installation was from qiime2-2022.2-py38-linux-conda.yml but I couldn't install RESCRIPt into it, so I'm switching.
Thanks for looking into this.
Best,
Leon
