Differences in OTU table (table.qza) and taxa collapse file

[Nicholas_Bokulich]

Hi @schmeltzy,

@schmeltzy

what I’m really after is merging taxonomy information with my OTU (feature) table

So I'm guessing you also need this information to export from QIIME2, e.g., to phyloseq, R, or another program. Is that correct?

A number of forum threads have discussed this (e.g., here, here, here)

I hope that helps!