Didn't use vsearch but its citation is showing up in my provenance

[Nicholas_Bokulich]

Hi @Emily_Sprague ,

@Emily_Sprague

Another thought for citation curation: my artifacts generated later in the workflow had two or three duplicates for some of the citations, so when I downloaded the Bibtex files into my reference manager I had to do some deleting.

For sure — this is because some underlying packages are key parts of multiple plugins or actions, so when parsing all citations in a provenance tree you get duplicate entries and need to dereplicate.

This plugin might be of interest/use to you here. provenance-replay has a replay citations action (mentioned but not shown in this tutorial?) to parse all citations in the provenance tree and dereplicate these:

Provenance Replay Beta Release and Tutorial

Hello everyone! I'm super excited to announce the alpha release (update: beta release) of provenance-lib, software I've been building to support scientific reproducibility, attribution, and collaboration on the QIIME 2 platform. provenance_lib is available in alpha release on the QIIME 2 Library Update: As of QIIME 2 2023.9, provenance-lib has been integrated into QIIME 2. For your entertainment and edification, I've included examples of some fun…