I am attempting to demultiplex my data with
demux but I am unsure how to have this command read my files properly. My sequences are in
.fastq format and my mapping file is just a
.txt and looks like this:
Does anyone have advice on how to use
demux to pair these files and demultiplex my data?
Thanks in advance!
Thanks for reaching out, apologies for the delay in response here!
I'd recommend checking out our User Docs to learn about how to import your data into QIIME 2 - this will walk you through how to import your data based on the format of your sequences. Once you've done that, you can take a look at the documentation on our demux commands and which one makes the most sense for your data.
Hope this helps! Cheers