Cutadapt Multicore flag

Is there a way to pass multi-core flag with ‘qiime cutadapt demux-paired’ ?

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Hi @Ravin_Poudel!

Unfortunately not, because the underlying tool (cutadapt) doesn't support multi-core demultiplexing:

Currently, multi-core support is not available when demultiplexing. You will get an error message if you try to use it. This limitations may be lifted in the future.

We do support multi-core trimming in this plugin (because cutadapt supports it).




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