creating a classifier for lepidopterans

[SoilRotifer (Mike Robeson)]

Hi @nietof ,

I think this thread will help:

dereplication error with data collected from `get-ncbi-data` command

A collection of sequence and taxonomy data were obtained running @BenKaehler’s fantastic get-ncbi-data command within RESCRIPt. Raw sequence data collected from get-ncbi-data are available here Raw taxonomy data collected from get-ncbi-data are available here I had intended on filtering and dereplicating these sequences using a series of RESCRIPt commands: cull-seqs and filter-seqs-length to filter, and dereplicate to … well, dereplicate. While the filtering commands completed successfully…

You'll see suggestions on how to remove sequences that do not have a matching ID in the taxonomy file. Then you should be able to use that filtered file as input to train your classifier.

-Mike