Conda install fails macOS 12.5.1

Hello,

I just got a new computer (MacBook Pro M1 2021) and am trying to install Qiime2 2022.2 with conda. When I run:

conda env create -n qiime2-2022.2 --file qiime2-2022.2-py38-osx-conda.yml

I get:

Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound:

  • bioconductor-iranges=2.28.0
  • pbzip2=1.1.13
  • bioconductor-shortread=1.52.0
  • q2-diversity-lib=2022.2.1
  • q2-gneiss=2022.2.0
  • blast=2.12.0
  • isa-l=2.30.0
  • q2templates=2022.2.0
  • perl-scalar-list-utils=1.62
  • gfortran_osx-64=9.3.0
  • q2-quality-filter=2022.2.0
  • libgcc=4.8.5
  • q2-phylogeny=2022.2.0
  • q2-types=2022.2.0
  • htslib=1.15.1
  • r-rcurl=1.98_1.6
  • q2-alignment=2022.2.0
  • q2-mystery-stew=2022.2.0
  • q2-emperor=2022.2.0
  • bowtie2=2.4.5
  • xopen=1.5.0
  • q2-diversity=2022.2.1
  • perl-encode=3.17
  • cutadapt=4.0
  • q2-fragment-insertion=2022.2.0
  • dnaio=0.9.0
  • gfortran_impl_osx-64=9.3.0
  • bioconductor-biocparallel=1.28.3
  • bioconductor-rsamtools=2.10.0
  • sortmerna=2.0
  • q2-feature-classifier=2022.2.0
  • perl-pathtools=3.75
  • perl-compress-raw-zlib=2.105
  • bioconductor-delayedarray=0.20.0
  • q2-longitudinal=2022.2.0
  • bioconductor-zlibbioc=1.40.0
  • scikit-bio=0.5.6
  • bioconductor-biostrings=2.62.0
  • r-jpeg=0.1_9
  • sepp=4.3.10
  • bioconductor-xvector=0.34.0
  • bioconductor-s4vectors=0.32.3
  • fasttree=2.1.10
  • unifrac=0.20.3
  • q2-cutadapt=2022.2.0
  • q2-deblur=2022.2.0
  • pandoc=2.18
  • bioconductor-genomicranges=1.46.1
  • mafft=7.505
  • entrez-direct=16.2
  • q2-feature-table=2022.2.0
  • q2-metadata=2022.2.0
  • q2-taxa=2022.2.0
  • bioconductor-rhtslib=1.26.0
  • perl-compress-raw-bzip2=2.103
  • iqtree=2.2.0_beta
  • python-isal=0.11.1
  • q2galaxy=2022.2.0
  • q2-vsearch=2022.2.0
  • q2-dada2=2022.2.0
  • bioconductor-genomicalignments=1.30.0
  • libgfortran5=9.3.0
  • r-vegan=2.6_2
  • emperor=1.0.3
  • q2-sample-classifier=2022.2.0
  • qiime2=2022.2.1
  • q2-demux=2022.2.0
  • perl-list-moreutils-xs=0.430
  • raxml=8.2.12
  • q2-quality-control=2022.2.0
  • vsearch=2.7.0
  • fastcluster=1.2.6
  • q2cli=2022.2.0
  • bioconductor-dada2=1.22.0
  • biom-format=2.1.10
  • q2-composition=2022.2.0
  • perl-json-xs=2.34
  • bioconductor-biobase=2.54.0
  • hmmer=3.1b2
  • perl-io-compress=2.106
  • samtools=1.15.1

Any idea what might be causing this?

Thanks,
Zach

Hey Zach,

I've also got an M1 mac and, unfortunately, bioconda does not ship native builds for the osx-arm64 processors inside of these things.

Here's the workaround we have right now:


The future looks bright: lots of software run great on the new Apple silicon and conda-forge already ships native osx-arm64 builds.

1 Like

Perfect, thank you Colin

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