In the output for gneiss balance-taxonomy, the colors used for the different categories are switched in the log ratio plot and the proportion plot. Here is an example. Its a minor thing but could be confusing. Im using 2018.8
We’re deprecating all of the visualizations in gneiss by the next release - so this won’t be a concern in the future release.
The recommendation for future analyses is to export the results to either Python or R to make custom results. There will be tutorials posted shortly on how to do that.