Hai,
I get the following error when testing qiime1 installation by using these commands.
(qiime1) dcbadmin@dcbadmin-P6-2355IL:~$ print_qiime_config.py -t
Traceback (most recent call last):
File “/home/dcbadmin/miniconda2/envs/qiime1/bin/print_qiime_config.py”, line 4, in
import(‘pkg_resources’).run_script(‘qiime==1.9.1’, ‘print_qiime_config.py’)
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/pkg_resources/init.py”, line 666, in run_script
self.require(requires)[0].run_script(script_name, ns)
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/pkg_resources/init.py”, line 1462, in run_script
exec(code, namespace, namespace)
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/qiime-1.9.1-py2.7.egg-info/scripts/print_qiime_config.py”, line 37, in
from skbio.util import remove_files
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/skbio/init.py”, line 15, in
import skbio.io
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/skbio/io/init.py”, line 309, in
import_module(‘skbio.io.clustal’)
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/importlib/init.py”, line 37, in import_module
import(name)
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/skbio/io/clustal.py”, line 123, in
from skbio.alignment import Alignment
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/skbio/alignment/init.py”, line 230, in
from ._alignment import Alignment, SequenceCollection, StockholmAlignment
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/skbio/alignment/_alignment.py”, line 21, in
from skbio.stats.distance import DistanceMatrix
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/skbio/stats/init.py”, line 45, in
from ._subsample import subsample, subsample_counts, isubsample
File “/home/dcbadmin/miniconda2/envs/qiime1/lib/python2.7/site-packages/skbio/stats/_subsample.py”, line 22, in
from .__subsample import _subsample_counts_without_replacement
File “init.pxd”, line 155, in init skbio.stats.__subsample (skbio/stats/__subsample.c:3964)
ValueError: numpy.dtype has the wrong size, try recompiling