Hello, I have installed a qiime2 AMI and also created an S3 bucket to house the metadata and sequences. I am able to SSH into my EC2 instance using my local linux VM.
How do I reference my sequences and metadata within my S3 bucket from my EC2 instance? I have also created an IAM role (profile) that “authorizes” my EC2 instance to use the S3 bucket.
Can I reference the dataset in my S3 bucket as s3://bucketname while using qiime2 commands from my EC2 instance? How?
I’m really stuck.