Archaea/eukaryotes taxonomic analysis

Guys,

I am using qiime2-2020.2. which database to use to classify archaea and eukaryotes?

Hi @elolimy,

Both the GreenGenes, and SILVA reference databases we have here can classify Archaea. However, only the SILVA reference database has Eukaryotes.

-Mike

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Thanks Mike! @SoilRotifer