Hi everyone,
I encountered an issue while running DADA2 pipeline on 250 environmental samples. I submitted a job to a Slurm queue on a server.
qiime dada2 denoise-paired --i-demultiplexed-seqs data.qza --p-trunc-len-f 0 --p-trunc-len-r 240 --p-trim-left-f 18 --p-trim-left-r 20 --p-trunc-q 5 --p-n-threads 1 --o-table data-table.qza --o-representative-sequences data-rep-seqs.qza --o-denoising-stats data-denoisings-stats.qza
After 27 hours, I received the following error:
An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more.
Debug info has been saved to /tmp/qiime2-q2cli-err-75hkokzg.log
Could you please assist?
Thank you!