I’m probably missing something obvious, but is there information somewhere about the primer/read mismatch allowed in
qiime feature-classifier extract-reads. It isn’t an exposed parameter, but it feels like it should be?
Context is that Im trying to use it to benchmark something else, which sets its threshhold at an error rate of 2 nt. I’m getting reads extracted from feature classifier that have primer-errors of 4 nts after accounting for degeneracy.