Sorry for posting the same error that has been discussed already within the forum. However, I have read carefully and tired already the solution posted already in the forum.
I got the following error when I tried to run the aldex2.
“Plugin error from aldex2:
An error was encountered while running ALDEx2 in R (return code 1), please inspect stdout and stderr to learn more.”
I have tried already solutions posted.
- I have checked if installed on R
- When I type “qiime aldex2 --help”, I can see the options, I do not get any error.
Usage: qiime aldex2 [OPTIONS] COMMAND [ARGS]…
Description: Analysis Of Differential Abundance Taking Sample Variation
Plugin website: https://github.com/ggloor/q2-aldex2
Getting user support: Please post to the QIIME 2 forum for help with this
–version Show the version and exit.
–citations Show citations and exit.
–help Show this message and exit.
aldex2 Analysis Of Differential Abundance
effect-plot Effect plots
extract-differences Extract differentially expressed features
- Here I also add the Debug info: qiime2-q2cli-err-1zk08tly 2.txt (2.6 KB)
Any help is would be perfect.