Hi QIIME Users,
When will aldex.glm module be included in q2aldex? Until that time, can any one please explain what is the inputs to create a model matrix to use it with aldex.clr in R?
As ALDEx2_vignette states, I need a RangedSummarizedExperiment object and vector containing a descriptor for the samples. I have ASVs table and metadata file for three groups.
My questions are, how can I convert them to dataframe of reads, do I need to merge them?
what are the covariates and mm in the documentation mean? Are they corresponding to the vector of conditions(condos)? Please excuse my shallow knowledge and would appreciate if you provide any tutorial or link can help when working with more than two groups.
@fedarko would you please help on that.