Hello!
I'm just moving from command line to q2-api via jupyter notebook. The issue I'm facing right now is related to my need to see the repseqs (FeatureData[Sequence]) produced by dada2 in a pd.DataFrame.
After considering the classical strategy of a visualizer, I chose to have this information contained in a pd.DataFrame because I want to explore some things by my own and I need the info to be easily accesible. I tried using repseqs.view(pd.DataFrame) but it cannot be done. The error is:
Exception: No transformation from <class 'q2_types.feature_data._formats.DNASequencesDirectoryFormat'> to <class 'pandas.core.frame.DataFrame'>
The main question is: How can I do to charge the repseqs in a dataframe? But it would be also good to know if there is a place where it is defined the available transformations from each data type. I've been digging in the github repository but I couldn´t find anything. Maybe there is other repository with more documentation?
Even if I was able to have the sequences in a pd.DataFrame, is it possible to return this information to an Artifact in order to continue with my workflow (i.e taxonomy assignment)?
Thank you very much!
VĂctor