Visualizer for Phylogenetic Tree

[Mehrdad (Meha)]

Hi,
Could you please tell me where is the visualizer command for the phylogeny trees?
I am using one of the items, now need to create .qzv format. I could not find the related command.
https://docs.qiime2.org/2019.1/plugins/available/phylogeny/

thanks

[colinbrislawn (Colin J Brislawn)]

Hello Meha,

According to this thread, Qiime 2 doesn’t have a visualizer for trees at the moment.

The good news is that you can export your tree and visualize it in another program. There are a bunch of examples of how to do it in that thread.

Good luck!
Colin

[thermokarst]

You don’t even need to export it — itol supports reading QZA files!

[Mehrdad (Meha)]

[thermokarst]

Correct, you can’t “paste” a QZA file into the text box. But, if you read down at the bottom of the page, the “Tree file” upload box is where you can select a QZA.

[Mehrdad (Meha)]

Yeah...you are right! I did it now. The tree is without any name or Id. It is weird

.