using rescript for new GTBD release

Hello @SoilRotifer ,

Thanks for this nice tutorial! I am trying to run rescript (qiime2-amplicon-2024.5) with the most recent version of GTDB (trying '220.1'). Is it possible for update rescript only inside a particular qiime2 release ? If not, I will just start working with version gtdb version 214 and update later for using 220.

All the best!

Hi @SantosRAC ,

Welcome to the forum and thanks for using RESCRIPt! You can install the most recent version (development version) of RESCRIPt inside your qiime2-amplicon-2024.5 environment with this command:

pip install git+https://github.com/bokulich-lab/RESCRIPt.git
qiime dev refresh-cache

That version has GTDB 220.1 as an option.

Good luck!

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