Tutorial of Artifact API on the qiime2 website

Hi All,
I just start to learn Python and Jupyter notebook and tried to follow the tutorials on the Qiime2 official website.

I installed qiime2-2017.12 for macOS within a conda environment under the ANACONDA NAVIGATOR.
Then, I activated it and tested installation. Thank you for the tutorial.

Now, I try installing other QIIME2 interfaces, Artifact API in the Jupyter Notebook,
However, it happened to the trouble reinstall the q2-feature-table.

My terminal Line was copied and pasted the bellow. I highly appreciate if you could help me :cry::sob:

(qiime2-2017.12) bash-3.2$ conda install --override-channels -c qiime2 -c defaults q2-feature-table q2-diversity
Solving environment: failed

PackagesNotFoundError: The following packages are not available from current channels:

  • q2-feature-table
  • q2-diversity

Current channels:

(qiime2-2017.12) bash-3.2$ anaconda search -t conda q2-diversity
Using Anaconda API: https://api.anaconda.org
Name | Version | Package Types | Platforms | Builds
------------------------- | ------ | --------------- | --------------- | ----------
qiime2-staging/q2-diversity | | conda | linux-64, osx-64 | py35hc34ff80_0, py35he8d1af2_0, py35h5207822_0, py35_0, py35hfc2d9ef_0
qiime2/q2-diversity | | conda | linux-64, osx-64 | py35hc34ff80_0, py35he8d1af2_0, py35_0
Found 2 packages

(qiime2-2017.12) bash-3.2$ anaconda search -t conda q2-feature-table
Using Anaconda API: https://api.anaconda.org
Name | Version | Package Types | Platforms | Builds
------------------------- | ------ | --------------- | --------------- | ----------
qiime2-staging/q2-feature-table | | conda | linux-64, osx-64 | py35h39ecf30_0, py35h616be09_0, py35h27efcc6_0, py35h10402e6_0, py35hd700907_0, py35h5be3b8d_0, py35_0
qiime2/q2-feature-table | | conda | linux-64, osx-64 | py35h27efcc6_0, py35_0, py35hd700907_0
Found 2 packages

Run ‘anaconda show <USER/PACKAGE>’ to get installation details

(qiime2-2017.12) bash-3.2$ anaconda show qiime2/q2-feature-table
Using Anaconda API: https://api.anaconda.org
Name: q2-feature-table
Access: public
Package Types: conda

  • 0.0.1
  • 0.0.5
  • 0.0.6
  • 2017.2.0
  • 2017.4.0
  • 2017.5.0
  • 2017.6.0
  • 2017.7.0
  • 2017.8.0
  • 2017.9.0
  • 2017.10.0
  • 2017.11.0
  • 2017.12.0

To install this package with conda run:
conda install --channel https://conda.anaconda.org/qiime2 q2-feature-table
(qiime2-2017.12) bash-3.2$ conda install --channel https://conda.anaconda.org/qiime2 q2-feature-table
Solving environment: failed

Hi @SabuTheCavy! Thanks for the information - it looks like you haven’t followed our official installation recommendation. Can you please give that a shot and let us know how it goes for you? You might need to clean up and remove your incomplete conda environment first:

$ conda env remove -n qiime2-2017.12

Let us know if that gets you moving again! :t_rex:

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.