Hello! I am following the steps provide in the Tutorial.
For casava-18 files, I have the following error:
Error: no such option: --input-format
qiime tools import \
--type 'SampleData[SequencesWithQuality]' \
--input-path casava-18-single-end-demultiplexed \
--input-format CasavaOneEightSingleLanePerSampleDirFmt \
I am not sure what am I doing wrong.
Welcome to the forum, @snieva!
Thanks for including your command in your post. Is that an exact copy/paste? You’ve probably already considered this, but your error could easily be caused by a typo.
Assuming that’s not the situation, please post the complete error message and traceback so we can dig into it. The code-block formatting I added to your post may help make it more readable.
One small thing that occured to me, what version of QIIME 2 are you running? This import API did change in the last year, it’s possible your deployment expects
--source-format (which makes much less sense than
input-path, hence the change).
You are agree. I am using the 2018.6 version. It was the problem.
I will take your advice for my future posts (probably many of them, because I am old user of QIIME 1 and I am currently in the transition to QIIME 2 ).
Yay! Hope it’s all smooth sailing from here, @snieva!
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