Trouble installing qiime2 - Solving environment: failed

Matthewgordon · August 14, 2024, 7:49am

Hi everyone,

I'm having some trouble with installing Qiime2 2024.5 and been reading up on some issues others are having. Im running WSL and getting some errors when it comes to solving environment which I havent had before, but I havent seen a post with these errors. Below is what the terminal is telling me:

conda env create -n qiime2-amplicon-2024.5 --file https://data.qiime2.org/dist
ro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
Channels:

released
bioconda
conda-forge
defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed
Channels:
released
bioconda
conda-forge
defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:

package bleach-6.1.0-pyhd8ed1ab_0 is excluded by strict repo priority
package c-ares-1.28.1-hd590300_0 is excluded by strict repo priority
package glpk-5.0-h445213a_0 is excluded by strict repo priority
package jq-1.7.1-hd590300_0 is excluded by strict repo priority
package libdeflate-1.20-hd590300_0 is excluded by strict repo priority
package perl-carp-1.50-pl5321hd8ed1ab_0 is excluded by strict repo priority
package perl-compress-raw-zlib-2.202-pl5321h166bdaf_0 is excluded by strict repo priority
package perl-encode-3.21-pl5321hd590300_0 is excluded by strict repo priority
package perl-exporter-5.74-pl5321hd8ed1ab_0 is excluded by strict repo priority
package perl-extutils-makemaker-7.70-pl5321hd8ed1ab_0 is excluded by strict repo priority
package perl-parent-0.241-pl5321hd8ed1ab_0 is excluded by strict repo priority
package perl-scalar-list-utils-1.63-pl5321h166bdaf_0 is excluded by strict repo priority
package argh-0.31.2-pyhd8ed1ab_0 is excluded by strict repo priority
package yq-3.4.3-pyhd8ed1ab_0 requires xmltodict >=0.11.0, but none of the providers can be installed
package paramiko-3.4.0-pyhd8ed1ab_0 requires pynacl >=1.5, but none of the providers can be installed
package ncbi-datasets-pylib-16.6.1-pyhdfd78af_0 requires urllib3 1.26.*, but none of the providers can be installed
package deblur-1.1.1-pyhdfd78af_0 requires scikit-bio >=0.5.0, but none of the providers can be installed
package bioconductor-phyloseq-1.46.0-r43hdfd78af_0 requires r-ade4 >=1.7-4, but none of the providers can be installed
package biom-format-2.1.15-py39hd1e30aa_1 is excluded by strict repo priority
package biopython-1.83-py39hf860d4a_0 is excluded by strict repo priority
package munkres-1.1.4-py_0 is excluded by strict repo priority
package r-abind-1.4_5-r43h142f84f_0 is excluded by strict repo priority
package r-bh-1.84.0_0-r44hc72bb7e_1 is excluded by strict repo priority
package r-bit-4.0.5-r43h76d94ec_0 is excluded by strict repo priority
package r-bit64-4.0.5-r43h76d94ec_0 is excluded by strict repo priority
package r-checkmate-2.3.1-r44hb1dbf0f_1 is excluded by strict repo priority
package r-data.table-1.15.2-r43h029312a_0 is excluded by strict repo priority
package r-deldir-2.0_4-r44hbcb9c34_1 is excluded by strict repo priority
package r-digest-0.6.35-r43ha503ecb_0 is excluded by strict repo priority
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package r-dplyr-1.1.4-r44h0d4f4ea_1 is excluded by strict repo priority
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package r-fnn-1.1.4-r44ha18555a_1 is excluded by strict repo priority
package r-futile.logger-1.4.3-r43h6115d3f_0 is excluded by strict repo priority
package r-futile.options-1.0.1-r43h142f84f_0 is excluded by strict repo priority
package r-ggplot2-3.5.1-r44hc72bb7e_1 is excluded by strict repo priority
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package r-htmltools-0.5.8.1-r44ha18555a_1 is excluded by strict repo priority
package r-htmlwidgets-1.6.4-r44hc72bb7e_2 is excluded by strict repo priority
package r-hwriter-1.3.2.1-r43h142f84f_0 is excluded by strict repo priority
package r-jpeg-0.1_10-r43h76d94ec_1 is excluded by strict repo priority
package r-jsonlite-1.8.8-r44hb1dbf0f_1 is excluded by strict repo priority
package r-knitr-1.47-r44hc72bb7e_1 is excluded by strict repo priority
package r-lambda.r-1.2.4-r43h142f84f_0 is excluded by strict repo priority
package r-magrittr-2.0.3-r43h76d94ec_0 is excluded by strict repo priority
package r-matrixstats-1.3.0-r44hb1dbf0f_1 is excluded by strict repo priority
package r-optparse-1.7.5-r44hc72bb7e_1 is excluded by strict repo priority
package r-permute-0.9_7-r43h142f84f_0 is excluded by strict repo priority
package r-pheatmap-1.0.12-r43h142f84f_0 is excluded by strict repo priority
package r-png-0.1_8-r43h76d94ec_0 is excluded by strict repo priority
package r-prettyunits-1.2.0-r43h142f84f_0 is excluded by strict repo priority
package r-progress-1.2.3-r44hc72bb7e_1 is excluded by strict repo priority
package r-proxy-0.4_27-r43h76d94ec_0 is excluded by strict repo priority
package r-rappdirs-0.3.3-r43h76d94ec_0 is excluded by strict repo priority
package r-rcppparallel-5.1.6-r43ha503ecb_1 is excluded by strict repo priority
package r-rcpptoml-0.2.2-r43h884c59f_0 is excluded by strict repo priority
package r-readr-2.1.5-r44h0d4f4ea_1 is excluded by strict repo priority
package r-rematch2-2.1.2-r43h142f84f_0 is excluded by strict repo priority
package r-rmarkdown-2.27-r44hc72bb7e_2 is excluded by strict repo priority
package r-rtsne-0.17-r44h4387864_1 is excluded by strict repo priority
package r-scales-1.3.0-r44hc72bb7e_1 is excluded by strict repo priority
package r-snow-0.4_4-r43h142f84f_0 is excluded by strict repo priority
package r-stringr-1.5.1-r44h785f33e_1 is excluded by strict repo priority
package r-tibble-3.2.1-r43h76d94ec_0 is excluded by strict repo priority
package r-vegan-2.6_6.1-r44h61c59f8_1 is excluded by strict repo priority
package r-viridis-0.6.5-r44hc72bb7e_1 is excluded by strict repo priority
package r-yaml-2.3.8-r44hb1dbf0f_1 is excluded by strict repo priority
package simplejson-3.19.2-py39h5eee18b_0 is excluded by strict repo priority
package tqdm-4.66.4-py39h2f386ee_0 is excluded by strict repo priority
package xopen-2.0.1-py39hf3d152e_0 is excluded by strict repo priority
package emperor-1.0.4-py39hf3d152e_3 is excluded by strict repo priority

Not sure what this "package X is excluded by strict repo priority" means - any ideas?

Thanks,
Matt

jphagen · August 14, 2024, 4:35pm

Hi @Matthewgordon,

I was able to find this forum post regarding the "strict repo priority". Try the suggestion there and see if that helps!

--Hannah

Matthewgordon · August 15, 2024, 10:42am

Hi Hannah,

Ah, missed this post - got it working now!

Many thanks,
Matt