Trouble installing QIIME 2 2020.8

Hello,
I am having the same issue as Charlene.
I have installed qiime2-2020.8.
And the output for
env and echo $0
is as follows

(qiime2-2020.8) [email protected]_64-apple-darwin13 ~ % env

TMPDIR=/var/folders/py/y1t44nks1kz40ytzjtg4y3tr0000gn/T/

XPC_FLAGS=0x0

LaunchInstanceID=10518E6A-D457-4207-AA16-CAE47E5A19D3

TERM=xterm-256color

DISPLAY=/private/tmp/com.apple.launchd.nDCSl88pjI/org.macosforge.xquartz:0

SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.RcVOjKr6RN/Listeners

SECURITYSESSIONID=186aa

XPC_SERVICE_NAME=0

TERM_PROGRAM=Apple_Terminal

TERM_PROGRAM_VERSION=433

TERM_SESSION_ID=D42266A2-EDD3-48A0-8DB0-5B60F53F0CE5

SHELL=/bin/zsh

HOME=/Users/devina

LOGNAME=devina

USER=devina

PATH=/Users/devina/miniconda3/envs/qiime2-2020.8/bin:/Users/devina/miniconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/go/bin:/opt/X11/bin

SHLVL=1

PWD=/Users/devina

OLDPWD=/Users/devina

CONDA_EXE=/Users/devina/miniconda3/bin/conda

_CE_M=

_CE_CONDA=

CONDA_PYTHON_EXE=/Users/devina/miniconda3/bin/python

CONDA_SHLVL=2

CONDA_PREFIX=/Users/devina/miniconda3/envs/qiime2-2020.8

CONDA_DEFAULT_ENV=qiime2-2020.8

CONDA_PROMPT_MODIFIER=(qiime2-2020.8)

CONDA_PREFIX_1=/Users/devina/miniconda3

MPLBACKEND=Agg

R_LIBS_USER=/Users/devina/miniconda3/envs/qiime2-2020.8/lib/R/library/

PYTHONNOUSERSITE=/Users/devina/miniconda3/envs/qiime2-2020.8/lib/python*/site-packages/

GFORTRAN=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-gfortran

FFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include

FORTRANFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include

DEBUG_FFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments

DEBUG_FORTRANFLAGS=-march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments

FC=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-gfortran

F77=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-gfortran

F90=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-gfortran

F95=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-gfortran

RSTUDIO_WHICH_R=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/R

CONDA_BACKUP_HOST=x86_64-apple-darwin13.4.0

HOST=x86_64-apple-darwin13.4.0

AR=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-ar

AS=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-as

CHECKSYMS=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-checksyms

INDR=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-indr

INSTALL_NAME_TOOL=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-install_name_tool

LIBTOOL=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-libtool

LIPO=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-lipo

NM=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-nm

NMEDIT=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-nmedit

OTOOL=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-otool

PAGESTUFF=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-pagestuff

RANLIB=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-ranlib

REDO_PREBINDING=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-redo_prebinding

SEG_ADDR_TABLE=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-seg_addr_table

SEG_HACK=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-seg_hack

SEGEDIT=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-segedit

SIZE=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-size

STRINGS=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-strings

STRIP=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-strip

LD=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-ld

CLANG=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-clang

CC=x86_64-apple-darwin13.4.0-clang

CPPFLAGS=-D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include

CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include

LDFLAGS=-Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/devina/miniconda3/envs/qiime2-2020.8/lib -L/Users/devina/miniconda3/envs/qiime2-2020.8/lib

LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs -rpath /Users/devina/miniconda3/envs/qiime2-2020.8/lib -L/Users/devina/miniconda3/envs/qiime2-2020.8/lib

DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include

_CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0

CMAKE_PREFIX_PATH=:/Users/devina/miniconda3/envs/qiime2-2020.8

CONDA_BUILD_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk

CLANGXX=/Users/devina/miniconda3/envs/qiime2-2020.8/bin/x86_64-apple-darwin13.4.0-clang++

CXX=x86_64-apple-darwin13.4.0-clang++

CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0 -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include

DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0 -Og -g -Wall -Wextra -isystem /Users/devina/miniconda3/envs/qiime2-2020.8/include

ARBHOME=/Users/devina/miniconda3/envs/qiime2-2020.8/lib/arb

ARBHOME_BACKUP=

GSETTINGS_SCHEMA_DIR_CONDA_BACKUP=

GSETTINGS_SCHEMA_DIR=/Users/devina/miniconda3/envs/qiime2-2020.8/share/glib-2.0/schemas

JAVA_HOME_CONDA_BACKUP=

JAVA_HOME=/Users/devina/miniconda3/envs/qiime2-2020.8

JAVA_LD_LIBRARY_PATH_BACKUP=

JAVA_LD_LIBRARY_PATH=/Users/devina/miniconda3/envs/qiime2-2020.8/lib/server

LC_CTYPE=UTF-8

_=/usr/bin/env

(qiime2-2020.8) [email protected]_64-apple-darwin13 ~ % echo $0

-zsh

Hi @Devinaseeruttun!

Let’s be sure that it is the same problem, first. Can you please let us know:

  • What commands you ran? Copy and paste please
  • What is the error you observed? Copy and paste (or screenshot), please

Thanks!

Hi,
After downloading Qiime 2
When activating conda, although the below error message pops up,
(base) [email protected] ~ % conda activate qiime2-2020.2

complete:13: command not found: compdef
qiime is activated
(qiime2-2020.8) [email protected]_64-apple-darwin13 ~ %

Thank for the help.
Cheers,
Devina

Hi @Devina_Bhookhun-Seer! Is this the same person as @Devinaseeruttun? If so, please make sure to delete your extra account, posting with two accounts is not allowed on this forum.

This is related to the tab-completion convenience in q2cli, and isn’t necessary for running QIIME 2. It does imply that you have an issue with your shell configuration - the post above indicates you’re using zsh, but might also have bash configuration polluting your environment, too. I can’t help you with that - you might want to talk to your system administrator.

Otherwise, proceed with QIIME 2, everything should be fine :crossed_fingers:

:qiime2:

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